| CD 1 : |
| 1. The military system (operation explanation - ranking) |
| 2. Main theme from metal slug (stage 1) |
| 3. Steel beast 5beats (boss stage) |
| 4. Carry out (stage clear) |
| 5. Inner station (stage 2) |
| 6. Assault theme (stage 3) |
| 7. Ridge 256 (stage 4) |
| 8. Gerhardt city (stage 5) |
| 9. Final attack (stage 6) |
| 10. End title (final performance 1p) |
| 11. Hold you still! (final performance 2p) |
| 12. Gravestone (game over) |
| 13. The military system (operation explanation, ranking) |
| 14. Barracks (character select) |
| 15. Judgment (stage 1-1) |
| 16. Steel beast 6beats (boss theme a) |
| 17. Prehistoric site (stage 2-1) |
| 18. The cenotaph (stage 2-3) |
| 19. First contact (boss theme b, stage 6-2) |
| 20. Livin on the deck (stage 3-1) |
| 21. Assault theme (boss theme c, stage 6-1) |
| 22. Back to the china (stage 4-1) |
| 23. New godokin street (stage 5-1) |
| 24. Kiss in the dark (stage 5-2) |
| 25. Metamorphosis (stage 5-3) |
| 26. Gravestone (game over) |
| 27. Final attack (stage 6-3) |
| 28. End title again (final performance) |
| 29. Carry out (stage clear) |
| CD 2 : |
| 1. The military system -x- (operation explanation, ranking) |
| 2. Barracks -x- (character select) |
| 3. Judgment -x- (stage 1-1) |
| 4. Steel beast 6beats -x- (boss theme a) |
| 5. Prehistoric site -x- (stage 2-1) |
| 6. The cenotaph -x- (stage 2-3) |
| 7. First contact -x- (boss theme b, stage 6-2) |
| 8. Livin on the deck -x- (stage 3-1) |
| 9. Assault theme -x- (boss theme c, stage 6-1) |
| 10. Back to the china -x- (stage 4-1) |
| 11. New godokin street -x- (stage 5-1) |
| 12. Kiss in the dark -x- (stage 5-2) |
| 13. Metamorphosis -x- (stage 5-3) |
| 14. Gravestone -x- (game over) |
| 15. Final attack -x- (stage 6-3) |
| 16. End title again -x- (final performance) |
| 17. Ms_x ending -x- (end credits) |
| 18. Carry out -x- (stage clear) |
| 19. The military system (operation explanation, ranking) |
| 20. Barracks (character select) |
| 21. Blue water fangs -the island of dr. Moreau- (main theme from metal slug 3) (stage 1) |
| 22. Marine diver (stage 1 altanative route?deep sea) |
| 23. The unknown world (stage 1 altanative route?core facility, ufo interior passage 1) |
| 24. Steel beast 7beats (boss theme a) |
| 25. Midnight wandering (stage 2) |
| 26. Devil's snow cave (stage 1 altanative route?cave of ice) |
| 27. Metamorphosis (boss theme b) |
| 28. The shallow sea (stage 3) |
| 29. Hard water (stage 3 altanative route?underground channel) |
| 30. Assault theme (stage 3 altanative route?bridge, stage 5-2) |
| 31. Secret factory (stage 3 altanative route?armory) |
| 32. Desert (stage 4) |
| 33. Pyramid (stage 1 altanative route?pyramid) |
| 34. The cenotaph (stage 4 altanative route?ancient ruins) |
| 35. The japanese army (stage 4 altanative route?ex-military hideout) |
| 36. Into the sky (stage 5-1) |
| 37. The kidnapping (alien appearance) |
| 38. Into the cosmos (the void of space) |
| 39. Kiss in the dark (enemy ufo interior) |
| 40. First contact (ufo interior passage 2) |
| 41. Bioinformatics (ufo interior passage 3) |
| 42. Escape (ufo escape) |
| 43. Final attack (final boss) |
| 44. End title (final production?staff roll) |
| 45. Gravestone (game over) |
| 46. Carry out (stage clear) |
| CD 3 : |
| 1. Declare war (opening demo) |
| 2. Choose a person (character select) |
| 3. Let's run through! (stage 1) |
| 4. Show spirit (stage 2) |
| 5. Snowy road (stage 3) |
| 6. Cadaverous (stage 4) |
| 7. Go ahead! (stage 5) |
| 8. The scene of a hard battle (boss 1) |
| 9. Furiously (boss 2) |
| 10. Secret place (stage 6) |
| 11. Uncanny laugh (demo before last boss) |
| 12. Final madness (last boss) |
| 13. Escape (demo after last boss) |
| 14. Good ending |
| 15. Bad ending |
| 16. End to the war (end credits) |
| 17. The military system -ms5 version- (operation explanation) |
| 18. Sortie! (character select) |
| 19. Heavy african (stage 1-1) |
| 20. Ruins excavation (stage 1-2) |
| 21. Windy day (stage 2-1) |
| 22. Zoom down (stage 2-2) |
| 23. Intrigue (stage 3) |
| 24. Run through (stage 4-1) |
| 25. Bottom of the sea (stage 4-2) |
| 26. Gravestone -ms5 version- (game over) |
| 27. Fierce battle (normal boss battle) |
| 28. Carry out -ms5 version- (stage clear) |
| 29. Speeder (stage 5-1) |
| 30. Lastditch resistance (stage 5-2) |
| 31. Final attack -ms5 version- (last boss) |
| 32. Road to success (end credits) |
| CD 4 : |
| 1. Last resort (character select) |
| 2. Main theme from ms6 (stage 1-1) |
| 3. Cliff and cave (stage 1-2) |
| 4. Steel beast 6+7 beets (boss 1) |
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